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Mass spectrometry of elements

A mass spectrometer does something no balance can: it sorts a sample atom by atom and counts how many land at each mass. For an element, that count is where the periodic table's average atomic mass actually comes from.

§1

What a mass spectrum actually shows.

A mass spectrometer takes a sample, turns its atoms into ions, and sorts those ions by mass — then counts how many land at each mass. The picture it produces is a mass spectrum: a set of vertical peaks. The horizontal position of a peak is the mass of a particle; the height of a peak is how common that particle is, its relative abundance.

For a pure element, every peak is one isotope. Isotopes are atoms of the same element — same number of protons, so same identity — that differ in their number of neutrons, and therefore in mass. Chlorine, for example, comes in two natural isotopes: chlorine-35 and chlorine-37. So chlorine's spectrum has exactly two peaks.

The payoff is the number printed on the periodic table. The average atomic mass of an element is not a measurement of one atom — it is the weighted average of its isotope masses, each weighted by how abundant that isotope is. The mass spectrum is where that weighted average comes from.

UNIT 1 TOPIC 1.2 • MASS SPECTROMETRY OF ELEMENTS MASS SPECTRUM OF CHLORINE 0 25 50 75 100 RELATIVE ABUNDANCE (%) 75.8% 35 chlorine-35 24.2% 37 chlorine-37 MASS-TO-CHARGE RATIO (m/z) AVERAGE ATOMIC MASS = Σ (isotope mass × fractional abundance) (34.97 × 0.758) + (36.97 × 0.242) = 35.45 g/mol — the value on the periodic table
Fig. 1.2.1 The mass spectrum of chlorine. Each peak is one isotope: its horizontal position is the isotope's mass, its height is how common that isotope is. The periodic-table value 35.45 is the abundance-weighted average of 35 and 37 — not the mass of any single chlorine atom.
§2

Reading the spectrum, peak by peak.

Every mass-spectrum question is some combination of these four reads. Do them in order and the weighted average falls out at the end.

  1. Count the peaks. One peak per isotope. Two peaks means two isotopes; three peaks, three isotopes. The number of peaks never tells you protons or electrons — only how many isotopes the element has.
  2. Read each peak's position as a mass. The horizontal axis is mass (technically the mass-to-charge ratio m/z, but the ions carry a +1 charge, so the number is just the isotope's mass). A peak at 37 is a chlorine-37 atom, not 37% of anything.
  3. Read each peak's height as an abundance. The taller the peak, the more common the isotope. Convert a percent abundance to a fractional abundance by dividing by 100: 75.8% becomes 0.758.
  4. Weight, then add. Multiply each isotope's mass by its fractional abundance, then sum every term. That sum is the average atomic mass: average mass = Σ (isotope mass × fractional abundance).

A fast sanity check before you compute: the weighted average must land between the lightest and heaviest isotope, and closer to whichever peak is taller. If your answer falls outside that range, you weighted something backwards.

§3

The pieces you'll meet.

Quick reference card. Keep straight what sits on each axis and which number gets weighted.

isotope
Isotope
Atoms of one element with different neutron counts, so different masses. Same protons, same chemistry.
m/z
Horizontal axis
Mass-to-charge ratio. With singly charged ions it reads as the isotope's mass. Sets a peak's position.
%
Relative abundance
The vertical axis. How common an isotope is. Sets a peak's height.
f
Fractional abundance
Percent abundance ÷ 100. The weight you actually multiply by. All fractions sum to 1.
Average atomic mass
Σ (isotope mass × fractional abundance). The weighted average — the periodic-table value.
weighted
Weighted, not plain
A plain average ignores abundance. Only weight by abundance to match the real value.
§4

Worked example: chlorine's average atomic mass.

Question. Chlorine's mass spectrum shows chlorine-35 (mass 34.97) at 75.8% abundance and chlorine-37 (mass 36.97) at 24.2% abundance. What is chlorine's average atomic mass?

Step 1 — convert percents to fractional abundances. Divide each by 100: 75.8% → 0.758 and 24.2% → 0.242. As a check, they add to 1.000.

Step 2 — weight each isotope's mass. Chlorine-35 contributes 34.97 × 0.758 = 26.51. Chlorine-37 contributes 36.97 × 0.242 = 8.95.

Step 3 — add the weighted terms. 26.51 + 8.95 = 35.45 g/mol, exactly the chlorine value on the periodic table.

Sanity check. The answer sits between 35 and 37, and much closer to 35 — which is right, because chlorine-35 is the far more abundant isotope. Notice no chlorine atom actually weighs 35.45; every real atom is either 35 or 37. The 35.45 is a bookkeeping average, not a description of any single atom.

§5

3 mistakes that cost real points.

Pitfall · 01

"Average the isotope masses and you're done."

Averaging 35 and 37 to get 36 ignores the whole point of the spectrum: the isotopes are not equally common. Chlorine-35 shows up three times as often as chlorine-37, so it pulls the average down toward 35, landing at 35.45 rather than 36. A plain average is only correct in the special case where every isotope is equally abundant.

Fix. Always weight by abundance: multiply each mass by its fractional abundance before adding. If you didn't use the percentages, you didn't use the spectrum.

Pitfall · 02

"There's a chlorine atom that weighs 35.45."

No single atom has the average mass. Every real chlorine atom is either chlorine-35 or chlorine-37 — whole-number-ish masses set by counting protons and neutrons. The 35.45 is a weighted average across a huge population of atoms, the way an average family can have 2.3 children without any family having 2.3 children.

Fix. Read "average atomic mass" as a property of the element's natural mix, not of one atom. Individual atoms sit at the peak positions; the average sits between them.

Pitfall · 03

"The tallest peak is the element's mass."

Height is abundance, not mass. The tallest peak tells you the most common isotope, but its position — not its height — is a mass. Reading a peak's height as a mass, or its horizontal position as a percentage, swaps the two axes and wrecks the calculation.

Fix. Lock the axes down first: horizontal = mass, vertical = abundance. Position feeds the "mass" slot of each term; height feeds the "fractional abundance" slot.

§6

Skill Check.

Ten scenarios. Pick the chips that match your answer, then check. A scenario marks complete the first time every part is right. Progress saves on this device.

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